PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616443.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 537aa    MW: 59463.3 Da    PI: 6.2104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.4e-30247306159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_009616443.1 247 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCIEDMSILITTYEGTHNHP 306
                     58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-31232306IPR003657WRKY domain
SuperFamilySSF1182904.84E-27239307IPR003657WRKY domain
PROSITE profilePS5081127.278242308IPR003657WRKY domain
SMARTSM007743.3E-36247307IPR003657WRKY domain
PfamPF031061.2E-26248306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MEVAFRKSIN GGLVKEEKRN KLADQSSSDE EGFVEDSNVL KVGKEREVHE DDNSKYPQQE  60
DIDSDKEDDQ LQSVKADMKE VMKENQRLKM HLDRIMKDYR NLQLQFHDIV QRNAEKSNSI  120
IDTDRHNECN EAEFVSLSLG RSSSDTKKEE YLSKILSKDK AEEENKGGLT LGLDCKFDLC  180
VKTTPTEFST ANLSEENRSE EVKDENGETL PPHKILKTMR NGEDDTQPNP SKRAKVSVRV  240
RCDVPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPSCP VRKQVQRCIE DMSILITTYE  300
GTHNHPLSLS ATSMAFTTSA AASMLLSGSS SSSESGPNPP ATDATNINGL NFYLSDSSKP  360
KPFYLQNSSI SSSSSPPTIT LDLTSSSFTS LFPHHNRMSS NYLPRYNSST NILNFSSLES  420
NPLLPMSWSN GAYNKNQEIS SLNFARRPQD ILFQSYLQNN ISAKPTQSLL PQDTIAAATK  480
AITSDPNFQS ALAVALASII GSGSGNHAGG IEEKSGLNLK VTEPFPVLCS FPSTSKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-19238307876Probable WRKY transcription factor 4
2lex_A1e-19238307876Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616443.10.0PREDICTED: probable WRKY transcription factor 61
TrEMBLK4BKG50.0K4BKG5_SOLLC; Uncharacterized protein
STRINGSolyc03g113120.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-63WRKY DNA-binding protein 72